File Release Notes and Changelog
Release Name: 1.9.1
Notes: Beta Release 1.9.1 (25 October, 2006) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ This is a bug fix release. Now njtree can be correctly packaged. We also fixed a potential memory violation, although that never happened. A new function to calculate an "SIS" (Species Intersection Score) was added. This score is the percentage overlap between the two species sets that are descendant from the two daughters of a duplication node. Higher value indicate more reliablity. We are sorry for the obvious bugs in the previous release, and hope you enjoy the new one.
Changes: ------------------------------------------------------------------------ r53 | lh3lh3 | 2006-10-25 11:34:40 +0100 (Wed, 25 Oct 2006) | 4 lines Changed paths: M /branches/dev/njtree/Makefile M /branches/dev/njtree/NEWS - fix a bug when packaging - release 1.9.1 ------------------------------------------------------------------------ r51 | lh3lh3 | 2006-10-24 15:23:38 +0100 (Tue, 24 Oct 2006) | 7 lines Changed paths: M /branches/dev/njtree/Makefile M /branches/dev/njtree/nhx_output.cc M /branches/dev/njtree/ortho.c M /branches/dev/njtree/sdi.c M /branches/dev/njtree/tree.h - add SIS (species intersection score) for duplication nodes - :DD=Y now means: Dubious Duplication. Previously it means "confirmed duplication". - fix a potential bug, although seemingly it has never happened. ------------------------------------------------------------------------
