GEOSS

File Release Notes and Changelog

Release Name: 2.5.2

Notes: Version 2.5.2 -------------- - contains a fix to the data load procedure. - improved error handling in the code for developers - fix to allow more than 26 biological replicates - ability to upload non-affymetrix data files for analysis - minor bug fixes (see bugzilla) - a new analysis module, classification To upgrade existing implementations: 1. Install new R libraries. The e1071 and MiPP libraries must be installed to support the new classification module. We installed e1071_1.5-10.tar.gz (http://cran.r-project.org/src/contrib/Descriptions/e1071.html) and MiPP_1.1.8.tar.gz (http://www.bioconductor.org/packages/bioc/stable/src/contrib/html/MiPP.html) # R CMD INSTALL MiPP_1.1.8.tar.gz # R CMD INSTALL e1071_1.5-10.tar.gz 2. Upgrade GEOSS # rpm -U geoss-2.5.1-1.i386.rpm 3. Add the "Unknown" arraylayout. From psql: insert into arraylayout (al_pk, con_fk, name, technology_type, chip_cost) values (0,2,'Not Listed','Unknown',0);