File Release Notes and Changelog
Notes:
Full version of MIAMExpress.
Changes:
Main new features are new in R1.01:
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1- Sample treatment protocol is a standard protocol that could be referenced once it has been created.
2- Growth condition protocol is a standard protocol that could be referenced once it has been created.
3- Feature mapping for GenePix data files for submissions which are based on ADF submitted array designs.
4- Pooling functionality; one can create an extract pooled from multiple sample.
Other Changes and Bug Fix:
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1- Unlike the previous version it generates email to the mailing list when a submitter sends a new array design.
2- The array design MAGE-ML creation program to write down the MAGE-ML file in the specified directory.
3- MAGE-ML creation program now creates external data files with the same name that submitter has submitted.
4- MAGE-ML creation program which creates MAGE-ML from ADF, now counts identifiers from 1 not 0.
5- Not creating two different compounds identifier for the same compound.
6- Growth condition duration: if submitter doesn't specify the time we shouldn't parse out the time unit.
7- Adding the not applicable to Time point drop down list.
8- Parse out the address in MAGE-ML file as organization's address.
9- Including Reporter Group in ADF parsed mage-ml file.
10-Take the Array design info from TARDESIN table and incorporate their values in the produced MAGE-ML file.
11-Add another OntologyEntry object and associated it as PolymerType in ADF->MAGE-ML creation.
12-MAGExpress doesnt create Database and DatabaseEntry objects when the values are NULL,anymore.
13-Having Submitter Role to the Person Object when ADF-> MAGE-ML.
14-Having Hardware and Software not as parameters of protocols but as hardware and software in MAGE-ML file.
15-US spelling in MAGE-ML file.
16-Include Unapproved CV associated to the "Other" entry in MAGE-ML file, everywhere in MAGExpress.
17-Having another column in ADF; "Fail Type" which we need a OntologyEntry object for that associated with
Reporter, according to the MAGE-OM.
18-In the produced mage-ml files get rid of spaces in the file name. (Replace it with UNDERLINE)
19-Fixing upload screens so that it doesn't remove the file on the server, when updating.
