Mapping and Assembly with Qualities

File Release Notes and Changelog

Release Name: 0.3.1

Notes:
Beta Release 0.3.1 (9 May, 2007)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

This is a release with minor revisions. The consensus calling model is
modified slightly which, unfortunately, decreases the accuracy by about
1%. However, I will stick to it anyway because it is more concise and
correct in theory. Actually, there is a bug when I was implementing the
old model.

Other changes include:

 * Add `subpos' command: extract a required subset from .cns file

 * Improve `pileup' output by making it more informative and allowing to
   extract a required subset.

 * Fix two bugs: one in k-small and the other in `mapcheck'. These are
   trivial, though.

(0.3.1: 9 May 2007, r94)


Changes:
See ChangeLog in the source code package.