I've run into a problem once more. Before I go into that I first want to thank you for your help the last couple of weeks. I am now using Celera Assembler version CVS TIP 2013-08-01 with success: having finished a pacBioToCA job and almost an assembly.
Now here's the issue: Celera Assembler crashes during the scaffolding stage, the core is dumped.
The cgw.out file contains the following error message: "Failed with 'Segmentation fault'".
runCA.sge.out holds the following error notion: "ERROR: Failed with signal ABRT (6)".
stdout reports: "ERROR: Failed with signal SEGV (11)".
Please refer to the attachments for more extensive error messages.
I've restarted the pipeline several times but the error is persistent.Is there any advice you can give me to find out what is going wrong? Thank you once again.