Using Eland format for Bowtie

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Anonymous
2011-07-18
2012-10-25

  • Anonymous
    2011-07-18

    Hello I have a raw reads file which is in the Eland format. But to run Bowtie
    alignment, I need it to be in the FASTQ format. I am aware that there might
    not be any conversion tools for converting Eland to FASTQ as Eland does not
    contain as much information as FASTQ.

    But still is there any way by which I can use the Eland raw reads in a Bowtie
    aligner ? Please let me know.

    Thanks.

     
  • David Nix
    David Nix
    2012-10-25

    I'd suggest posting this in to the Bowtie project!