I am beginner in staden-1-5-3 for windows. I have a little problem with the assemble of sequencepairs in pregap4. When the interactive clipping module is activ, I become an error message, while the program is running:
Error in startup script
couldn't open "D:/Programs/Staden": no such file or directory while executing "open($argv 0" ("while body line40) invoked from within "while ($argc>=1)( set arg(string tolower (index $argv0)) if ($arg=="edits")( set e(index $argv 1) incr argc-1 set argv..." file "d:/programs staden packege/lib/trev/trev.tcl"line 1460)
And pregap4 write in the error window this:
"interactive_clip::run: child process exited abnormally"
What does it mean? And how can I use the interactive clipping module, without error message?
When anyone have an idea... thanks for help:
from Szeged, HU
Hi, I am also a beginner in Staden. I seem to have solved the problem by running the progarm under a one-word-name folder (i.e., C:\Staden). I used windows explorer to do this. I originally installed the package in the folder "C:\Staden Package", so I deleted the second part of the folder name to "C:\Staden". I guess that "C:\Program_Files" or "C:\Staden_Package" would also work.
This does sound like a problem with spaces in the filenames. It certainly used to work in Program Files, so I'm not sure where the problem has crept in.
However the workaround of using C:\Staden_Package seems suitable until I fix this bug.
I could make the assembly with interactive clipping, if I made an other output folder, than folder contains the cromatograms. Such simple...
On the same note, the same error occurred already with Version2003.0b1. While waiting for it to go way, I use Pregap4 from Version2002.0, installed in a different directory, where there was no problem with the spaces.
This particular bug has now been fixed. The problem is in the lib/pregap4/modules/interactive_clip.p4m.
Search for -fofn $fofn.tmp and replace with -fofn [list $fofn.tmp] instead.