Commit [r3699] Maximize Restore History

Added an interface to save heterozygous bases in the consensus.

Internally there are some new functions for this too (eg
calculate_consensus_simple_het) as well as some experimental only
functions for evaluation of SNP calling. (It is not expected that Gap5
will perform well here.)

jkbonfield 2014-07-08

changed /staden/trunk/src/gap5/newgap5_cmds.c
changed /staden/trunk/src/gap5/consensus.c
changed /staden/trunk/src/gap5/gap5rc
changed /staden/trunk/src/gap5/consen.tcl
changed /staden/trunk/src/gap5/consensus.h
/staden/trunk/src/gap5/newgap5_cmds.c Diff Switch to side-by-side view
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/staden/trunk/src/gap5/consensus.c Diff Switch to side-by-side view
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/staden/trunk/src/gap5/gap5rc Diff Switch to side-by-side view
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/staden/trunk/src/gap5/consen.tcl Diff Switch to side-by-side view
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/staden/trunk/src/gap5/consensus.h Diff Switch to side-by-side view
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