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Commit [r3591] Maximize Restore History

Added an automatic adapter detector. This works by hashing the

soft-clip and hashing the used data (FIXME: need to strip pads) and
then comparing the distributions.

Also reduced memory and potentially sped up on very long contigs by
doing shuffle pads in 32Kb windows. This avoids purging of memory
cache.

jkbonfield 2014-03-04

changed /staden/trunk/src/gap5/shuffle_pads.c
changed /staden/trunk/src/gap5/shuffle_pads.h
/staden/trunk/src/gap5/shuffle_pads.c Diff Switch to side-by-side view
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/staden/trunk/src/gap5/shuffle_pads.h Diff Switch to side-by-side view
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