Commit [r3588] Maximize Restore History

Improvements to Shuffle Pads's validate_clip() function. Using a

similar method to rewrite_soft_clips (possibly the validation should
be merged into that code), it now counts differences to the
consensus. This is often more reliable than counting SNP consensus
bases when faced with highly varying read depth.

jkbonfield 2014-02-28

changed /staden/trunk/src/gap5/shuffle_pads.c
/staden/trunk/src/gap5/shuffle_pads.c Diff Switch to side-by-side view
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