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#9 Mutation report command crashes gap4

V1.4.1
closed-fixed
Gap4 (50)
5
2005-09-29
2004-04-30
Anonymous
No

My Linux SuSE 9.0

The mutation report command crashes gap4 when some
templates (patient DNAs) could be sequenced only single
stranded (The second strand sequence failed because of
double sequence due to InsDel mutation.).

Discussion

  • Logged In: NO

    Holger Wedler
    holger.wedler@freenet.de

     
  • Logged In: NO

    InsDel Mutations are not reported correctly, when the second
    strand sequence failed (e.g. due to mutation close to the
    primer)

    Holger Wedler
    holger.wedler@freenet.de

     
  • James Bonfield
    James Bonfield
    2004-05-24

    Logged In: YES
    user_id=154581

    Is this a duplicate of Bug ID 956032? It looks it.
    If I do not hear otherwise I will close this bug.

    James

     
  • James Bonfield
    James Bonfield
    2005-09-29

    Logged In: YES
    user_id=154581

    I believe that this bug has now been fixed. I managed to
    reproduce some crashes in this code and solved them, so I am
    assuming this is the same cause.

    The fixes are in CVS and will therefore be part of 1.6.0.

    James

     
  • James Bonfield
    James Bonfield
    2005-09-29

    • assigned_to: nobody --> jkbonfield
    • status: open --> closed-fixed