#72 Spelling errors in io-lib 1.12.2

closed-fixed
None
5
2010-01-18
2010-01-17
Charles Plessy
No

Dear James,

I have just uploaded the staden-io-lib package in Debian. Our Lintian package checker is getting more and more amazing, and found two spelling mistakes in one program and manpage. Here is a patch:

Index: progs/srf2fastq.c

--- progs/srf2fastq.c (révision 1964)
+++ progs/srf2fastq.c (copie de travail)
@@ -533,7 +533,7 @@
fprintf(stderr, " i.e. name/1, name/2 etc.\n");
fprintf(stderr, " -e Include explicit sequence: the names of the regions of type 'E'\n");
fprintf(stderr, "\n");
- fprintf(stderr, " -r 1,2.. In a comma seperated list, specify which regions to reverse,\n");
+ fprintf(stderr, " -r 1,2.. In a comma separated list, specify which regions to reverse,\n");
fprintf(stderr, " counting from 1. This will reverse complement the read and\n");
fprintf(stderr, " reverse the quality scores. (requires -s or -S)\n");
exit(1);
Index: man/man1/illumina2srf.1
===================================================================
--- man/man1/illumina2srf.1 (révision 1964)
+++ man/man1/illumina2srf.1 (copie de travail)
@@ -15,7 +15,7 @@
\fBillumina2srf\fR converts the Illumina GA-pipeline run folder output
into an SRF file. It should be run from the
Bustard\fI<version><date>\fR directory. It has a wealth of options,
-listed below, although many have defaults and may be ommitted if the
+listed below, although many have defaults and may be omitted if the
run folder follows the standard directory layout. The arguments, after
the options, should be the filenames of the sequence files, eg
\fIs_8_*_seq.txt\fR. All other filenames are derived from the _seq.txt

Have a nice day,

--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan

Discussion

  • James Bonfield
    James Bonfield
    2010-01-18

    Thank you Charles.

    I've applied the srf2fastq.c fix. The illumina2srf man page was included in error as it's been removed from staden-io_lib now. SVN has been updated.

     
  • James Bonfield
    James Bonfield
    2010-01-18

    • assigned_to: nobody --> jkbonfield
    • status: open --> closed-fixed