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#25 core dump of 2nd-highest conf. graph

v1.5.3
closed-fixed
Gap4 (50)
5
2005-01-20
2005-01-18
Alfred Beck
No

ISelecting view-> 2nd-higest confidence graph and then
"OK" gives a core dump if in the Option -> Consensus
alporithm the "Base frequencies" or "Weigthed base
frequencies" is selected:

Level 3: CreateConfidenceGraph 1 second 4 .consistency_win1
Level 2: CreateNewConfidenceGraph 1 second {xb54g2.s1
xb66e5.s1 xb60b12.s1 xb63c1.s1 xb66g11.s1 xc39b3.s1}
Level 1: ConfGraph_OK_Pressed 1 second
.confidence_graph_winsecond
.confidence_graph_winsecond.id
.confidence_graph_winsecond.infile
Tue 18 Jan 14:16:55 2005 signal_handler: Program
terminated unexpectedly with signal 8.
Tue 18 Jan 14:16:55 2005 signal_handler: This is
probably a bug.
Tue 18 Jan 14:16:55 2005 signal_handler: Please report
all bug reports at https://sourceforge.net/projects/staden/

[2] Abort gap4 DEMO.0 (core
dumped)

This happens on: Linux & OSF4 (both recompiled)

Discussion

  • James Bonfield
    James Bonfield
    2005-01-20

    • assigned_to: nobody --> jkbonfield
     
  • James Bonfield
    James Bonfield
    2005-01-20

    Logged In: YES
    user_id=154581

    Ooh so it does - 100% reproducable too!

    I'll investigate.

    James

     
  • James Bonfield
    James Bonfield
    2005-01-20

    • status: open --> closed-fixed
     
  • James Bonfield
    James Bonfield
    2005-01-20

    Logged In: YES
    user_id=154581

    I've checked in a change to the CVS tree; file qual.c.

    The bug was that the 2nd-highest confidence array was not
    computed with the older consensus algorithms. It now does,
    although they're not as useful as when using phred scores.

    James