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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to our open mzXML format.

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TPP GUI main page
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PeptideProphet model viewer
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MS/MS spectral viewer
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ProteinProphet results
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Sequence viewer
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pepXML viewer


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