From: Vincent Wolowski <vwolowski@gm...> - 2013-03-01 09:29:35
I would like to use the BclReader to convert Illumina bcl files to sam
or fastq files.
>From the documentation I got the following:
BclReader bcl_reader = new BclReader(new File(bcl_file));
BclReader.BclValue val = bcl_reader.next();
byte b = val.base;
byte q = val.quality;
How can I convert base and quality to strings here?
Sorry if I missed something obvious.