From: Adam Witney <awitney@sg...> - 2013-06-18 08:36:24
I recently ran samtools mpileup from a Makefile and some extra fields
appeared, the QS and RPB fields. e.g:
samtools mpileup -gf ref.fa seq.bam | bcftools view -cg - > all.vcf
NC_000962 233 . T . 81 .
NC_000962 234 . G . 45 .
When I run this makefile on another machine those fields aren't there.
Any ideas what is making these fields appear? and also what does QS
mean? I can't seem to find it in the manual.
[Samtools Version: 0.1.18 (r982:295); bcftools 0.1.17-dev (r973:277)]
Thanks for any help