Picard release 1.16
12 March 2010
- Fix spelling of SAMRecord.setReadUmappedFlag => setReadUnmappedFlag
(old spelling still exists but deprecated).
- Added HISTOGRAM_WIDTH parameter to Histogram.
- Handle case in which BAM file to be read is a pipe rather than a
- When iterating over SAM text, don't parse a line until that line is
requested by the caller, so that exceptions & warnings arrive at the
appropriate time. Previously it parsed line n+1 when the iterator was
returning line n.
- Added implements closeable to SAMFileReader.
- Fixed bug in RG and PG header merge. Implemented merging of PG headers
with the new PP (Previous Program) attribute.