Re: [Samtools-devel] htsjdk IndexedFastaSequenceFile buffer

[Tim F. <tfe...@br...>]

I’m pretty sure there’s no good reason, but that there are just a couple of places left in our code where buffer sizing predates the introduction of Defaults.BUFFER_SIZE and which we didn’t catch and fix at the time.  Pull request very welcome!  Thanks,

-t

On Jun 12, 2014, at 9:25 AM, Louis Letourneau <lou...@ma...> wrote:

> I was wondering why IndexedFastaSequenceFile has it's own buffer vs using Default.BUFFER_SIZE
> 
> Or at least, have a programmatic way to set it if there is the need for it to not use Default.BUFFER_SIZE?
> 
> I can send a pull request if you'd like.
> 
> Thanks
> Louis
> 
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