Re: [Samtools-help] Ignore LB for picard MarkDuplicates?

[Alec W. <al...@br...>]

Hi Rob,

No, there isn't.  You could create a new BAM in which the LB field is 
the same for all the @RG records in the header.  This could be done with 
samtools reheader or Picard ReplaceSamHeader.

-Alec

On 2/22/11 10:52 AM, Rob Denroche wrote:
>
> Hi,
>
> Is there any way to instruct picard's MarkDuplicates to ignore the LB 
> field and collapse PCR duplicates across all the libraries in a bam file?
>
> Thanks,
>
> *Rob Denroche*
>
> Bioinformatics Support Specialist
>
>
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