Thank you very much for your comments.
So from what I understand is that I keep one structure as 'constant' and align all others with respect to that structure. Am I right?
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PyMOL doesn't do multiple sequence alignments, but you can align multiple objects to a single shared targets...
align mobile1, target1
align mobile2, target2
etc.
Whoops, I meant:
align mobile1, target1
align mobile2, target1
align mobile3, target1
etc.
Thank you very much for your comments.
So from what I understand is that I keep one structure as 'constant' and align all others with respect to that structure. Am I right?
correct.