I'm trying to rotate an object about an axis about that runs through
it using the cmd.rotate command in Pymol 1.0, and am getting
Here's the command that I'm using;
I've attached two screen shots, one before the operation, and one
after. (Before.jpg and After.jpg).
The center of electron density, eCenter is shown as a blue sphere in
the images, while e1Axis runs from eCenter to the phenolic oxygen,
shown as a sphere.
A big give away that the command is not working as I wish is that the
phenolic oxygen does not lie on the e1Axis after the rotation,
although the center of electron density, eCenter does remain in the
Is this a bug in the rotate command, or a misuse of the rotate command?
Thanks! and all the best,