From: Warren D. <wa...@de...> - 2009-03-13 15:33:03
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Paul, Thank you for that bug report! The command: extract waters, solvent solves the problem by pulling solvent atoms out into a separate object (named "waters"). Cheers, Warren ________________________________ From: Paul Mcewan [mailto:Pau...@no...] Sent: Friday, March 13, 2009 5:01 AM To: pym...@li... Subject: [PyMOL] side chain helper Dear all, I'm currently using PyMol v1.2b2 and think I may have found a little glitch. While preparing a figure with waters and stick representations on a cartoon backbone with the sidechain helper switched on the sphere representation of the waters disappear leaving only nonbonded crosses. If there is any trick (other than blending the images in photoshop) to get around this could you let me know. Thanks, Paul.. ################################### Dr. Paul A. McEwan Office B55 Centre for Biomolecular Science University of Nottingham Nottingham NG7 2RD UK Tel: 0115 8232010 (office) Tel: 0115 8232011 (lab) <https://owa.nottingham.ac.uk/exchweb/bin/redir.asp?URL=http://www.notti ngham.ac.uk/pharmacy/research/medicinal-chemistry-struct> http://www.nottingham.ac.uk/pharmacy/research/medicinal-chemistry-struct <http://www.nottingham.ac.uk/pharmacy/research/medicinal-chemistry-struc tural-biology/structbio.php> ural-biology/structbio.php ################################### This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. |