Is there any possibility (or a plugin doin that) to display only the
binding pocket of a ligand-receptor complex?
For example displaying all residues not farer away than 6 A from any
(Ligand of corse non covalently bound?)
Check the selection stuff in Pymol: help selections
> For example displaying all residues not farer away than 6 A from any
> ligand Atom?
If ligand is your ligand selection and protein the protein part, this
is done simply (intuitively) with:
show sticks, byres protein within 6 of ligand
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
3584 CH Utrecht