I had generated many symmetry mates of my structure using pymol symexp
command. I got many objects generated. Each contains one symmetry
related molecule. Now I want to save all objects in one pdb file. I do
"Select all", create new object from this selection and save the object
as pdb file. Unfortunately since the original structure was a chain A
all symmmetry mates also are chain A. It causes problems for several
other programs which have troubles when pdb file which has mulitple
residues with the same name, number and chain name.
My question is: how to save multiple objects from pymol as one nice pdb
file, for instance with each object with different chain name?
From: Peter Adrian Meyer <pam52@co...> - 2005-11-21 19:41:39
> My question is: how to save multiple objects from pymol as one nice pdb
> file, for instance with each object with different chain name?
alter SymgenObject,chain 'X'
and repeat as needed for all objects (changing the chain as needed). Then
use all of your objects as the selection for save (aka save
BMCB grad student