I try to write a script able to reorient a protein and to save (in a pdb
format) the reoriented structure.
I have a problem during the saving phase of my script.
When I use the update function some atoms are not tacken into account.
Typically, if several atoms have the same name (for example HB of a sidechain)
only the first one is updated. This leads to a final wrote structure with a
series of atoms badly positionned.
Do you have any idea to solve this problem ?
Thank you for your help