I am trying to modify dihedral angles of a polymer chain. Once I
perform all the required steps, I am able to orient the chain and
align the chain along the same axis as the original chain. But
unfortunately, pymol moves the chain to a different position.
Basically, it changes the coordinates in a way that the center of the
chain is at the origin. I want the chain to lie along the original
chain with backbones coinciding with each other (almost). Is that
possible in pymol ?
Thank you and Regards,