Re: [PyMOL] Fast Coloring

[Charles M. <cm...@in...>]

	I have almost got the coloring working fast, but I have one last 
problem.  I am just loading a pdb, then I am wanting to go through and 
set the 'q' variable for each atom to the value I am wanting to color 
on.  How do I get a chempy handle on the molecule being displayed? 
'get_model' seems to return a copy of the chempy model being displayed.

Thanks,
	Charlie

Warren DeLano wrote:
> Charles,
> 
> The fastest way to color by value is to have the value in the temperature
> factor or occupany column and then use the spectrum command.  For example:
> 
> spectrum b
> 
> spectrum b, blue_white_red
> 
> spectrum b, blue_white_red, minimum=5, maximum=50
> 
> Etc.
> 
> Cheers,
> Warren
> 
> 
> 
> --
> mailto:wa...@de...
> Warren L. DeLano, Ph.D.
> Principal Scientist
> DeLano Scientific LLC
> Voice (650)-346-1154 
> Fax   (650)-593-4020
>   
> 
> 
>>-----Original Message-----
>>From: pym...@li... 
>>[mailto:pym...@li...] On Behalf Of 
>>Charles Moad
>>Sent: Monday, August 23, 2004 5:50 AM
>>To: pym...@li...
>>Subject: [PyMOL] Fast Coloring
>>
>>	I am working on a plugin that entails coloring residues 
>>based on a value.  Right now creating a new color for each 
>>residue and setting the color corresponding works, BUT it is 
>>very inefficient and takes more than a tolerable amount of 
>>time to display.  Is there a better approach? 
>>  It is possible to assign a procedural color to the protein?
>>
>>Thanks,
>>	Charlie
>>
>>
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> 
> 
> 
>