Re: [PyMOL] H-bond drawing?

[Tsjerk W. <t.a...@ch...>]

Hi Claire,

If it's only a few H-bonds, probably the quickest is the following:

Select the first atom with ctrl-shift left-mouse button
Select the second atom with crtl-shift right-mouse button
then issue the command 'distance <Return>'
That should draw you a nice dashed bond.

Hope it helps a bit, maybe Warren would have better ideas, but good luck!

Cheers,

Tsjerk

Claire Sharpe wrote:

>Hi there,
>
>Sorry I'm going to ask probably a very basic question but could anyone
>tell me how to create H-bonds in pymol?
>
>I used SPDB viewer to model the interface between two dimers in a
>tetrameric molecule.  I now need to create some good pictures of this for
>my thesis as SPDB isn't really good enough.  I'd like to represent H-bonds
>(not bond distances just bonds) e.g between ThrOG1 of subunit A and
>Asp184OD1 of subunit D.  I'm presuming that pymol can do this-if so would
>really appreciate it if anyone could tell me how to enter in the command
>line as I'm afraid I'm not used to it and thesis deadline looms on thurs!
>
>Many thanks,
>
>Claire
>*******************************************************************************
>
>Claire Sharpe
>
>Department of Biochemistry
>University of Cambridge
>80, Tennis Court Road
>Cambridge. CB2 1GA
>U.K
>
>Tel: 01223 766045
>Fax: 01223 766002
>email: ce...@mo...
>
>
>
>
>
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