* Craig Smith <boilerine@...> [2003-09-22 03:30] wrote:
> I've done a structural alignment of 2 domains using your align command.=
> How do I write out the new coordinates?
Look at "help save".
save file [,(selection) [,state [,format]] ]
This will save the modified coordinates generated by the alignment.
align protein2 & n. ca, protein1
save protein2_align.pdb, protein2
will save the coordinates for protein2 after it has been aligned with
Robert L. Campbell, Ph.D. <rlc1@...>
Senior Research Associate phone: 613-533-6821
Dept. of Biochemistry, Queen's University, fax: 613-533-2497
Kingston, ON K7L 3N6 Canada http://adelie.biochem.queensu.ca/~rlc
PGP Fingerprint: 9B49 3D3F A489 05DC B35C 8E33 F238 A8F5 F635 C0E2