From: Sri R. <sr...@gm...> - 2012-11-22 07:16:31
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Hi All I am very new to using Pymol. I am wondering if anyone can point me towards the right direction with the following: 1) I have a list of peptides and would like to know what their location is on their respective proteins which already have structures in PDB (surface exposed, buried, helix, loop or beta sheet?) I guess I could do it manually but the peptide list could go into hundreds and would be nice to see if there a command line or a script I could use. 2) Can i ask Pymol to show the peptide's location on the 3d structure of the protein? perhaps in a different colour to highlight location? Manually I would select on the sequence and show as whatever I want but is there a command to automate a huge list? Is it possible to do these tasks with Pymol or is there any other software I could be using? Thanks very much for your help, Cheers Sri |