From: Marius R. <mar...@gm...> - 2011-08-23 13:18:36
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I've never tried to use pymol in a powerpoint presentation and I have no idea what disabling security is suppose to do. Did you try to call pymol with the -o argument. This supposedly disables the security of session files. http://www.pymolwiki.org/index.php/Command_Line_Options Marius GnuPG http://db.tt/rr7Hd0Y On Tue, Aug 23, 2011 at 3:03 PM, Tatyana Sysoeva <tat...@gm...> wrote: > the same one: > > Traceback (most recent call last): > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line > 338, in parse > parsing.run_file(path,self.pymol_names,self.pymol_names) > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", line > 455, in run_file > execfile(file,global_ns,local_ns) > File "C:\Users\Tanya\pymolrc.py", line 1 > set security, off > ^ > SyntaxError: invalid syntax > > > > Tanya > On Tue, Aug 23, 2011 at 8:58 AM, Marius Retegan <mar...@gm...> > wrote: >> >> What error to you get this time? >> >> These all work for me >> >> set security, 0 >> set security, off >> set security=off >> >> Marius >> >> GnuPG http://db.tt/rr7Hd0Y >> >> >> >> On Tue, Aug 23, 2011 at 2:53 PM, Tatyana Sysoeva >> <tat...@gm...> wrote: >> > true, my bad, but it does not work with 0,1,2 etc, as well as set >> > security, >> > off or set security = 0 >> > >> > I am sorry for the wrong file I sent. >> > >> > On Tue, Aug 23, 2011 at 8:51 AM, Marius Retegan >> > <mar...@gm...> >> > wrote: >> >> >> >> That variable (ray_trace_mode) dows not accept logical values. >> >> http://www.pymolwiki.org/index.php/Ray_trace_mode#Modes >> >> >> >> GnuPG http://db.tt/rr7Hd0Y >> >> >> >> >> >> >> >> On Tue, Aug 23, 2011 at 2:44 PM, Tatyana Sysoeva >> >> <tat...@gm...> wrote: >> >> > >> >> > Hi Tsjerk, >> >> > >> >> > I am attaching the file and the terminal text. >> >> > >> >> > ++++++++++++++++++++++++++++++++++++++++++++++++ >> >> > This Executable Build integrates and extends Open-Source PyMOL 1.3. >> >> > Traceback (most recent call last): >> >> > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", >> >> > line >> >> > 338, in parse >> >> > parsing.run_file(path,self.pymol_names,self.pymol_names) >> >> > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", >> >> > line >> >> > 455, in run_file >> >> > execfile(file,global_ns,local_ns) >> >> > File "C:\Users\Tanya\pymolrc.py", line 1 >> >> > set ray_trace_mode, on >> >> > ^ >> >> > SyntaxError: invalid syntax >> >> > +++++++++++++++++++++++++++++++++++++++++++++ >> >> > >> >> > Thanks, >> >> > Tanya >> >> > >> >> > >> >> > >> >> > On Tue, Aug 23, 2011 at 12:18 AM, Tsjerk Wassenaar >> >> > <ts...@gm...> >> >> > wrote: >> >> >> >> >> >> Hi Tanya, >> >> >> >> >> >> Does it say more than "syntax error"? Can you send the whole output? >> >> >> (copy crom the grey screen). In addition, can you send the pymolrc >> >> >> file as attachment? There might be something to do with line >> >> >> endings; >> >> >> so don't paste it in the mail, but attach the actual file that >> >> >> fails. >> >> >> >> >> >> Cheers, >> >> >> >> >> >> Tsjerk >> >> >> >> >> >> On Tue, Aug 23, 2011 at 2:03 AM, Tatyana Sysoeva >> >> >> <tat...@gm...> wrote: >> >> >> > >> >> >> > Dear all, >> >> >> > >> >> >> > I have quite silly question but I could not find an answer so far. >> >> >> > I am trying to use Pymol in a Power point presentation. For that I >> >> >> > would >> >> >> > like to change the default setting in Pymol - >> >> >> > set security, off >> >> >> > I have created a file pymolrc and put it in C:/Program >> >> >> > Files/PyMol/PyMol/. >> >> >> > When I am launching Pymol, it reads the file, but respond with >> >> >> > "syntax >> >> >> > error". >> >> >> > I checked and the same command is working properly if I type it >> >> >> > directly >> >> >> > into the Pymol prompt. >> >> >> > >> >> >> > I would appreciate any corrections or advices! >> >> >> > Thank you very much, >> >> >> > Tanya >> >> >> > >> >> >> > >> >> >> > >> >> >> > >> >> >> > >> >> >> > ------------------------------------------------------------------------------ >> >> >> > Get a FREE DOWNLOAD! and learn more about uberSVN rich system, >> >> >> > user administration capabilities and model configuration. Take >> >> >> > the hassle out of deploying and managing Subversion and the >> >> >> > tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 >> >> >> > >> >> >> > _______________________________________________ >> >> >> > PyMOL-users mailing list (PyM...@li...) >> >> >> > Info Page: >> >> >> > https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> >> > Archives: >> >> >> > http://www.mail-archive.com/pym...@li... >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Tsjerk A. Wassenaar, Ph.D. >> >> >> >> >> >> post-doctoral researcher >> >> >> Molecular Dynamics Group >> >> >> * Groningen Institute for Biomolecular Research and Biotechnology >> >> >> * Zernike Institute for Advanced Materials >> >> >> University of Groningen >> >> >> The Netherlands >> >> > >> >> > >> >> > >> >> > >> >> > ------------------------------------------------------------------------------ >> >> > Get a FREE DOWNLOAD! and learn more about uberSVN rich system, >> >> > user administration capabilities and model configuration. Take >> >> > the hassle out of deploying and managing Subversion and the >> >> > tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 >> >> > >> >> > _______________________________________________ >> >> > PyMOL-users mailing list (PyM...@li...) >> >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> > Archives: >> >> > http://www.mail-archive.com/pym...@li... >> >> > >> > >> > > > |