From: Jason V. <jas...@sc...> - 2011-03-14 13:27:57
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Hi Tomas, > I found this website http://crick.mbu.iisc.ernet.in/~PIC/index.html, > but I would rather use pymol if possible. I suggest you only use PyMOL to visualize the results of a validated calculation, or use it to run a script/program that performs the calculation and then view the results. At this time, PyMOL does not have any validated, built in features to do this detection. > can you help me please how to calculate interaction surface between 2 > subunits of my protein? Having said that, if you simply need something for visualization there are simple scripts on the PyMOLWiki that might help. For example, I wrote InterfaceResidues.py (http://www.pymolwiki.org/index.php/InterfaceResidues) to use difference of surface area to find possible interface residues. This was not validated, surely has lots of scientific holes, and only exists to make visualization easier in PyMOL. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |