Re: [PyMOL] Protein Movie

[Noinaj <no...@uk...>]

ashutosh,

disclaimer:  i am probably not the best person to give advice about =
this, but you might check out the morph server. =20

http://www.molmovdb.org/molmovdb/morph/

i am assuming that you have two pdb files that differ only the =
helix/sheet that you are interested in trying to create the morph.  if =
this is the case, i think this server might help you out.  Furthermore, =
I think there is a version of PymoL (included with purchasing a license, =
i think) that includes plugins (scripts? or whatever) that is capable of =
doing these 'morphing' movies directly within Pymol.  You might want to =
email Warren or other Pymol reps to get more information on the =
specifics.

here is another link that uses LSQMAN to do morphing also and might be =
another option.

http://ginsberg.med.virginia.edu/~dcoop/Help/morph.html

Hope some of this helps and best of luck!



Cheers,
Nick


  ----- Original Message -----=20
  From: Ashutosh Mishra=20
  To: pym...@li...=20
  Sent: Friday, October 20, 2006 8:26 AM
  Subject: [PyMOL] Protein Movie


  Hi,

  Can some body help me in making a movie in which only one helix/sheet =
in the protein is moving while rest of the molecule remain static.=20

  Thanks a lot

  ashutosh


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