The problem I'm referring to is here:

http://www.pymolwiki.org/index.php/Contact_map_visualizer 


From: bell_beauty12@hotmail.com
To: pymol-users@lists.sourceforge.net
Subject: Installed Gromacs but generate contact map using g_mdmat (Gromacs) still failed
Date: Mon, 12 Mar 2012 08:57:11 +1200


Hello.

We've just successfully installed Gromacs on Ubuntu Linux (Virtual Machine) but the problem is when running g_mdmat from Gromacs package by the following command

g_mdmat -f 2p31.pdb -s 2p31.pdb -mean contact-map.xpm

The result gives me 'no command found'

Perhaps we haven't connected Gromacs to PyMOL to make this work?

Please help.

Regards,
Suhaila.