Hi everyone!

I am using PyMOL for creating molecular surfaces (SAS), starting form a pdb file. I have some problems with "large" proteins like the head of a protein kinase, because the program creates some internal surfaces, disconnected from the larger one.
I have found the ConnecetdCloud tool and I would use it for selecting all the connected surface atoms taking part to the calculus of the surface. I don't know if it is a good way. Anyway, I tried to do this and the program returned an invalid syntax error while specifing the origSel (I tried both with atom name and aminoacid...). Can anyone help me?

Thank you very much in advance,

Ila


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