many thanks jason…..worked a treat…..

    j.


Dr. Jonathan M. Grimes, 
NDM Senior Reseach Fellow
University Research Lecturer
DIAMOND Research Fellow

Division of Structural Biology
Wellcome Trust Centre for Human Genetics
University of Oxford
Roosevelt Drive,
Oxford OX3 7BN, UK

Email: Jonathan@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk 
Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547       

On 25 Nov 2013, at 14:29, Jason Vertrees <jason.vertrees@schrodinger.com> wrote:

Jon,

You can also iterate over a selection and show the color index for each color

iterate *, color

You can then color by those indices, eg:

color 26

Cheers,

-- Jason


On Mon, Nov 25, 2013 at 5:42 AM, Jonathan Grimes <jonathan@strubi.ox.ac.uk> wrote:

 dear all,

  i am having implementing these instructions.

  i would like to work out what color an object is……

  how is this defined …..

> s["names"][1][5][0][1]
>
> equals your object name.

  if I have an object called A1…i am unsure how to
   make A1 equal to s["names"][1][5][0][1]


  many thanks

  jon


Dr. Jonathan M. Grimes,
NDM Senior Reseach Fellow
University Research Lecturer
DIAMOND Research Fellow

Division of Structural Biology
Wellcome Trust Centre for Human Genetics
University of Oxford
Roosevelt Drive,
Oxford OX3 7BN, UK

Email: Jonathan@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk
Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547

On 12 Dec 2012, at 17:24, Jason Vertrees <jason.vertrees@schrodinger.com> wrote:

> Hi Jon,
>
>> ive been given a pse file.....and i am trying to work out what color
>>   an object is......
>>
>>   i used the command
>>
>> get cartoon_color, pT_A
>>
>>  and got back....
>>
>> get: cartoon_color = default in object pT_A
>
> You're right, that's not very helpful. This will get you the answer,
> but it's not very straightforward:
>
> s = cmd.get_session()
>
> print cmd.get_color_tuple(s["names"][1][5][0][2])
>
> To make sure you have right object ensure that,
>
> s["names"][1][5][0][1]
>
> equals your object name.
>
> Cheers,
>
> -- Jason
>
> --
> Jason Vertrees, PhD
> Director of Core Modeling Product Management
> Schrödinger, Inc.
>
> (e) Jason.Vertrees@schrodinger.com
> (o) +1 (603) 374-7120




--
Jason Vertrees, PhD
Director of Core Modeling Products
Schrödinger, Inc.

(e) Jason.Vertrees@schrodinger.com
(o) +1 (603) 374-7120