Good afternoon,

 

I'm using PyMOL 1.3 and I would like to select one specific part of the molecule based on a peptide sequence that it is presented in protein. Is there any way to select subsequences in PyMOL?

 

A fictitious example:

 

Protein sequence:

...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK...

 

Peptide:

GKTQKV

 

I know that I can search manually this peptide in the sequence using the PyMOL. However, for huge protein, it takes a lot of time. Is there any automated routine to do this?

 

Thank you in advance.

 

 

Júlio César da Silva
Brazilian Bioscience Laboratory

Campinas, SP - Brazil
+ 55 (19) 3512-1116
julio.silva@lnbio.org.br (novo e-mail: favor atualizar o seu cadastro)

www.lnbio.org.br


--
Bradley J. Hintze
Graduate Student
Duke University
School of Medicine
801-712-8799