Dear all
I need to align lets say resi 80-120 and 160-220 from one protein to resi 80-120 and 160-220 in second protein. How can i do this.
I tried following:
align PDB1 and resi 80-120, PDB2 and resi 80-120 
this is for one set but how to do for two sets 80-120 as well as 160-220 simultaneously.
Thank you