Hi David,

I installed tcl without the corefoundation and now while trying to install pymol I am getting the following error message:

Error: org.macports.archivefetch for port pymol returned: tk must be installed without +quartz.

How can I install tk without +quartz? Are these issues happening because OSX 10.8.2 comes with preinstalled tcl and tk ? 

Thanks
Rhitankar


 


On Tue, May 7, 2013 at 12:30 PM, David Hall <lists@cowsandmilk.net> wrote:
by default, macports installs tcl with the +corefoundation variant (see http://guide.macports.org/#using.variants )

if you do:

sudo port install tcl -corefoundation

that will solve the problem.

-David




On Mon, May 6, 2013 at 8:26 PM, Rhitankar Pal <rhitankar@gmail.com> wrote:
Dear Thomas,

One more question. When I tried to install pymol using port [ sudo port install pymol ] I get the following error message:

Error: org.macports.archivefetch for port pymol returned: tcl must be installed without +corefoundation.

Do you have any idea why there is this error message? 

Eventually I downloaded the tar.gz and installed it using the setup.py inside. Which is apparently not compatible with the Pmw2 and therefore gave the error I mentioned in my previous email. Any help would be appreciated

Thanks
Rhitankar





On Mon, May 6, 2013 at 8:20 PM, Rhitankar Pal <rhitankar@gmail.com> wrote:
Dear Thomas,

Now I have installed Pmw.1.3 which should be the one compatible with python2.7 I guess. However I am still getting the same error. I think pymol is trying to use Pmw2 by default. Is there any way we can ask it to use 1.3 instead? 

Thanks for your help

Rhitankar



On Sat, May 4, 2013 at 6:21 AM, Thomas Holder <thomas.holder@schrodinger.com> wrote:
Hi Rhitankar,

looks like you installed the python3 version of Pmw which is not
compatible with python 2.7.

Cheers,
  Thomas

Rhitankar Pal wrote, On 05/03/13 21:16:
> Dear Pymol developers,
>
> I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and have the
> following error while opening the GUI
>
> Traceback (most recent call last):
>   File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", line 35,
> in run
>     PMGApp(pymol_instance,skin).run(poll)
>   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 325,
> in __init__
>     self.runSkin()
>   File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line 251,
> in runSkin
>     self.skin.setup()
>   File
> "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
> line 3661, in setup
>     self.createInterface()
>   File
> "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
> line 3634, in createInterface
>     self.balloon = Pmw.Balloon(self.root)
>   File
> "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py",
> line 28, in __init__
>     Pmw.MegaToplevel.__init__(self, parent)
>   File "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py",
> line 982, in __init__
>     super().__init__(parent, tkinter.Toplevel)
> TypeError: super() takes at least 1 argument (0 given)
>
> As a result it never opens the "The Pymol Molecular Graphics System"
> window. Can anyone help to find out what might be wrong.
>
> Thanks
> Rhitankar
>
> --
> Rhitankar Pal
> Postdoctoral Researcher,
> Dept of Chemistry, Yale University
> New Haven, CT 06511

--
Thomas Holder
PyMOL Developer
Schrödinger Contractor

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--
Rhitankar Pal
Postdoctoral Researcher,
Dept of Chemistry, Yale University
New Haven, CT 06511



--
Rhitankar Pal
Postdoctoral Researcher,
Dept of Chemistry, Yale University
New Haven, CT 06511

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--
Rhitankar Pal
Postdoctoral Researcher,
Dept of Chemistry, Yale University
New Haven, CT 06511