On Mon, Oct 10, 2011 at 2:58 AM, Tsjerk Wassenaar <tsjerkw@gmail.com> wrote:
Hey Lina,

It most likely is a consequence of the update. But the error comes
Hi Tsjerk,

Right now I downgrade the pymol from 1.4.1-1+b1 to 1.4.1-1. It works.

I was kinda of lazy sometimes, should have carefully checked earlier.

But, which problem cause the version 1.4.1-1+b1 not functional well I still don't know. (http://packages.debian.org/wheezy/pymol)


from the settings code, so I assumed that you set some settings at
startup, which brings a .pymolrc in mind. Not loading that file would
then solve it, although the problem is probably more fundamental, and
I would suspect you'd get an error like that when just setting some
setting in Pymol. If you can give more information regarding the
modules that were updated, it would be very helpful. Otherwise, I'm
rather clueless...



On Sun, Oct 9, 2011 at 7:42 PM, lina <lina.lastname@gmail.com> wrote:
> On Oct 10, 2011, at 1:04, Tsjerk Wassenaar <tsjerkw@gmail.com> wrote:
> Hi Lina,
> Can you tell more? What version are you using, what system are you on, do
> you use a .pymolrc, and what exactly do you do?
> Version 1.4.
> Debian amd64
> I did use .pymolrc.
> Please kindly notice the problem just recent two days showed up.
> The .pymolrc has been used for a while.
> Today I reinstalled the pymol. Still the same.
> Do you think it's related to the .pymolrc?
> Right now I'm not in front of computer.
> Later (now is 1:40 am here, probably 8 or 9 hours later) I can remove the
> .pymolrc and test.
> Actually I suspected It might due to the update of some package in my box.
> But I have no clue about how to check further.
> Thanks.
> Cheers,
> Tsjerk
> On Oct 9, 2011 5:05 PM, "lina" <lina.lastname@gmail.com> wrote:
> On Sun, Oct 9, 2011 at 10:50 PM, lina <lina.lastname@gmail.com> wrote: > >
> Hi, > > I met the followi...
> Still something abnormal.
> When I tried to write session, it's terminated and showed:
>   Save: Please wait -- writing session file...
> Segmentation fault
>> Thanks,
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously valuable.
> Why? It contains a definitive record of application performance, security
> threats, fraudulent activity, and more. Splunk takes this data and makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2dcopy2
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands