Hi there,

For anyone with experience using the ColorByRMSD script, I've used it to compare two identical PDB structures and the result is a spectrum of blues to reds, telling me there is discrepancy between the two structures (when there shouldn't be?). Can anyone explain why this might be happening, and if the script autoscales the colors depending on the range of deviation in a given comparison?

Thanks,
Alicia

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Alicia Hersey
Brown University '15
69 Brown St., Box 3083
Providence, RI 02912