check this out:
http://www.pymolwiki.org/index.php/InterfaceResidues

if you want faster and easier, but less reliable (in my opinion) way, you can analyze your .pdb with PISA:
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html

vitali

On Sun, Nov 20, 2011 at 1:51 AM, rjayashree13-science@yahoo.co.in <rjayashree13-science@yahoo.co.in> wrote:
I have a PDB file for a dimeric protein. Is it possible to depict the intersubunit contacts for any PDB file? Is Pymol alone sufficient for this purpose or will it only help visualization?
Could you also tell me which commands in Pymol can I use for this purpose? I have tried a lot but could not get an answer to this. I will be very thankful for the favour.
 
Dr. Jayashree Ramana


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