Dear Pymol users,

I'm  a begginer  with command lines in Pymol.  I'm trying to complete  the following task through a pymol  script:

1) Write a file named "file1.txt" with an aminoacid sequence (e.g. CVGLTUW)

2) Open  a .pdb molecule (file2.pdb) with the same number of residues, but with a different sequence (e.g. ALTWSIK)

3) Write a code where the pymol will pick each residue of the file2.pdb (I believe that this could be made by the mutagenesis wizard command) and mutate for the respective aminoacid written in my file1.txt

4) Save the new filein .pdb format (file3.pdb)

I'll be very greatful for any help!

Thanks  in advance,
--
M.Sc. Maurício Menegatti Rigo
Núcleo de Bioinformática do Laboratório de Imunogenética
Departamento de Genética
Instituto de Biociências
Universidade Federal do Rio Grande do Sul - Campus do Vale
Av. Bento Gonçalves, 9500 - Bairro Agronomia - Prédio 43323 M
CEP:91501-970 Caixa Postal 15053
Porto Alegre, RS, Brasil
Tel: +55 51 3308 9938