you are welcome to send me your file, then I'll have a look.
On Oct 22, 2013, at 5:52 AM, Yotam Avital <firstname.lastname@example.org> wrote:
> Hi Thomas.
> Thanks for the quick replay. I installed the svn version of pymol with the same result. I know that 6000 atoms isn't much for this task and this baffle me. Is there a way for me to de-bug this? Perhaps my input file is faulty.
> On Tue, Oct 22, 2013 at 1:32 AM, Thomas Holder <email@example.com> wrote:
> Hi Yotam,
> 6000 atoms should be absolutely no problem, even with much less memory. There were few known memory leaks that have been fixed since 1.4, so could you try to compile the latest code from SVN?
> On Oct 21, 2013, at 4:58 PM, Yotam Avital <firstname.lastname@example.org> wrote:
> > Hi.
> > I have python (1.4) on a xubuntu 12.04 machine (fresh install). The machine has 6GB ram and an intel i3 processor (I don't remember the exact model). On a previous install of Ubuntu (13.04) I had no trouble viewing files of that size, but now I can't. I get the "standard" EEK! pymol just run out of memory etc.
> > To my knowledge, 6GB of ram should be sufficient for such task, isn't that so?
> > How can I view these files?