Thomas, thanks this works perfect.
Jason, I've tested this script on my system ( this is the membrane protein inserted in the bilayer surrounded by two water layers ( up and down ). During simulation individual water mollecules move into the protein interiour ( in that case protein like a water pore althought it's the receptor ) so I want to visualise only that buried water.
I've tried to do it via find_buried_waters script both via ASA as well as in case when I've used small cutoffs ( 0.1) but the script selected too many waters ( e.g virtually all waters from up and down layers have been selected ). How I could specify this selection more carefully ?
find_buried_waters 1, 0.1
sorry, not "group mode" but "grid mode" of course.This will show them in the same slot in group mode.
MPI for Developmental Biology