Dear PyMol users!


After editing of my pdb files by means of PyMol I've noticed that some of my structures contain of wrong TER enties in the body of the pdb files. In all cases I save my processed pdb file by the PyMol context menu bar.
Below you can find xxample of processed file with the wrong TER enty:

ATOM   1048  C   GLN A 148      62.717  15.038  24.185  1.00159.20           C 
ATOM   1049  O   GLN A 148      62.170  16.003  24.721  1.00160.85           O 
ATOM   1050  CB  GLN A 148      60.966  14.990  22.391  1.00157.41           C 
ATOM   1051  CG  GLN A 148      60.245  14.214  21.299  1.00164.79           C 
ATOM   1052  CD  GLN A 148      61.187  13.683  20.234  1.00171.18           C 
ATOM   1053  OE1 GLN A 148      62.378  13.993  20.230  1.00175.57           O 
ATOM   1054  NE2 GLN A 148      60.654  12.880  19.321  1.00174.45           N 
ATOM   1055  N   PRO A 149      63.997  14.705  24.415  1.00152.79           N 
ATOM   1056  CA  PRO A 149      64.879  15.450  25.320  1.00137.09           C 
ATOM   1057  C   PRO A 149      65.073  16.892  24.868  1.00130.60           C 
ATOM   1058  O   PRO A 149      65.669  17.672  25.611  1.00127.66           O 
ATOM   1059  CB  PRO A 149      66.204  14.689  25.221  1.00136.58           C 
ATOM   1060  CG  PRO A 149      65.828  13.324  24.755  1.00144.26           C 
ATOM   1061  CD  PRO A 149      64.668  13.530  23.836  1.00151.11           C 
TER    1062      PRO A 149
ATOM   1063  N   GLY A 158      65.079   6.711  35.576  1.00221.82           N 
ATOM   1064  CA  GLY A 158      63.944   7.519  35.982  1.00219.41           C 
ATOM   1065  C   GLY A 158      62.683   6.698  36.169  1.00218.58           C 
ATOM   1066  O   GLY A 158      62.260   6.442  37.297  1.00218.85           O 
ATOM   1067  N   CYS A 159      62.080   6.285  35.059  1.00216.88           N 
ATOM   1068  CA  CYS A 159      60.855   5.496  35.100  1.00213.74           C 
ATOM   1069  C   CYS A 159      61.030   4.163  34.379  1.00214.80           C 
ATOM   1070  O   CYS A 159      60.118   3.336  34.354  1.00213.86           O 
ATOM   1071  CB  CYS A 159      59.694   6.277  34.481  1.00211.79           C 
ATOM   1072  SG  CYS A 159      59.342   7.859  35.283  1.00233.24           S 
ATOM   1073  N   GLY A 160      62.206   3.961  33.794  1.00216.16           N 
ATOM   1074  CA  GLY A 160      62.493   2.743  33.059  1.00217.18           C 
ATOM   1075  C   GLY A 160      61.866   2.749  31.679  1.00215.69           C 
ATOM   1076  O   GLY A 160      60.981   3.557  31.395  1.00214.72           O 

In that example you can see the wrong string
TER    1062      PRO A 149

Some of my programs uncorrectly recognise such TER enties as the end of one CHAIN and bigining of the another after TER. Could you tell me how I could avoid of such TER after processing of my pdbs via PyMol ?

Thanks for help


James