Pymol 1.3 is still available online, but it doesn't work with any versions of python greater than 2.5.  If I try to install Pymol 1.4 doesn't work when I install it (problems with the GLEW library).  I don't understand that problem either.  It looks like it can't find GLEW, but I know that its path is included (see code below).  I have never tried compiling pymol from source before, so I have never gotten it to work.  And I reinstalled my GLUT library and rebuilt, but that did not fix the crashing problem in my original post.  Any more suggestions?  Thanks!

~Lauren

...
warning: implicit declaration of function ‘glewInit’
layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this function)
layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported only once
layer0/ShaderMgr.c:173: error: for each function it appears in.)
layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use in this function)
layer0/ShaderMgr.c:185: warning: implicit declaration of function ‘glewGetErrorString’
...

2011/12/19 Troels Emtekær Linnet <tlinnet@gmail.com>
Ok, maybe I am not the right person to ask.

But.
How did you get Pymol 1.3 ?
The one in the subversion repo is 1.4.1

And it looks like you have python 2.5
I dont know if PyMOL needs python 2.7

Have you compiled before, where it worked?

Best
T


Troels Emtekær Linnet
Slotsvej 2
4300 Holbæk
Mobil:
+45 60210234



2011/12/19 Lauren Porter <lauren.perskie@gmail.com>
Yes, I have GLUT installed (I'm using the framework), and I rerouted everything to make sure it was pointing to the right path.  After doing that, I rebuilt and got a new error:


Python 2.5.4 (r254:67916, Aug  1 2011, 15:52:49)
[GCC 4.2.1 (Apple Inc. build 5646)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import pymol
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, in <module>
    import _cmd
ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2): Symbol not found: _FT_Done_Face
  Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so
  Expected in: flat namespace
 in /Library/Python/2.5/site-packages/pymol/_cmd.so



I read that this is because of a problem with the freetype 2 library, but I included the library's path in the setup file, so I have no idea what else to do.  Any ideas?  Thanks!

~Lauren


2011/12/19 Troels Emtekær Linnet <tlinnet@gmail.com>
2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '-[GLUTApplication _setup:]: unrecognized
--------------------------------------


Do you have glut installed ?

http://www.pymolwiki.org/index.php/Linux_Install#Requirements

freeglut3-dev

Best
Troels



2011/12/19 Lauren Porter <lauren.perskie@gmail.com>
Hi Everyone,

   I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow Leopard), but pymol keeps crashing.  The compilation looks clean, so I have no idea why it's giving me trouble.  I have pasted the details below.  Any help would be much appreciated.  Thanks!

~Lauren

Python 2.5.4 (r254:67916, Aug  1 2011, 15:52:49)
[GCC 4.2.1 (Apple Inc. build 5646)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import pymol
>>> pymol.finish_launching()
>>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490
2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was raised
2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490
 selector sent to instance 0x1805490'
*** Call stack at first throw:
(
    0   CoreFoundation                      0x906e36ca __raiseError + 410
    1   libobjc.A.dylib                     0x990c15a9 objc_exception_throw + 56
    2   CoreFoundation                      0x9073090b -[NSObject(NSObject) doesNotRecognizeSelector:] + 187
    3   CoreFoundation                      0x90689c06 ___forwarding___ + 950
    4   CoreFoundation                      0x906897d2 _CF_forwarding_prep_0 + 50
    5   Tk                                  0x17e11ea8 TkpInit + 601
    6   Tk                                  0x17d7d60a Tk_PkgInitStubsCheck + 2489
    7   _tkinter.so                         0x01d9afe8 Tcl_AppInit + 130
    8   _tkinter.so                         0x01d9af09 var_perform + 2295
    9   Python                              0x0007ad4d PyEval_EvalFrameEx + 16241
    10  Python                              0x0007cac6 PyEval_EvalCodeEx + 1734
    11  Python                              0x000274ce PyClassMethod_New + 2213
    12  Python                              0x0000c2a8 PyObject_Call + 50
    13  Python                              0x00015db7 PyClass_New + 1710
    14  Python                              0x0000c2a8 PyObject_Call + 50
    15  Python                              0x00076130 PyEval_CallObjectWithKeywords + 211
    16  Python                              0x0001566f PyInstance_New + 330
    17  Python                              0x0000c2a8 PyObject_Call + 50
    18  Python                              0x0007c332 PyEval_EvalFrameEx + 21846
    19  Python                              0x0007cac6 PyEval_EvalCodeEx + 1734
    20  Python                              0x000274ce PyClassMethod_New + 2213
    21  Python                              0x0000c2a8 PyObject_Call + 50
    22  Python                              0x00015db7 PyClass_New + 1710
    23  Python                              0x0000c2a8 PyObject_Call + 50
    24  Python                              0x00076130 PyEval_CallObjectWithKeywords + 211
    25  Python                              0x0001566f PyInstance_New + 330
    26  Python                              0x0000c2a8 PyObject_Call + 50
    27  Python                              0x0007c332 PyEval_EvalFrameEx + 21846
    28  Python                              0x0007cac6 PyEval_EvalCodeEx + 1734
    29  Python                              0x00027461 PyClassMethod_New + 2104
    30  Python                              0x0000c2a8 PyObject_Call + 50
    31  Python                              0x0007c363 PyEval_EvalFrameEx + 21895
    32  Python                              0x0007aedc PyEval_EvalFrameEx + 16640
    33  Python                              0x0007aedc PyEval_EvalFrameEx + 16640
    34  Python                              0x0007cac6 PyEval_EvalCodeEx + 1734
    35  Python                              0x000274ce PyClassMethod_New + 2213
    36  Python                              0x0000c2a8 PyObject_Call + 50
    37  Python                              0x00015db7 PyClass_New + 1710
    38  Python                              0x0000c2a8 PyObject_Call + 50
    39  Python                              0x00076130 PyEval_CallObjectWithKeywords + 211
    40  Python                              0x000a3edf initthread + 1756
    41  libSystem.B.dylib                   0x91446259 _pthread_start + 345
    42  libSystem.B.dylib                   0x914460de thread_start + 34
)
Trace/BPT trap


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