Check this, and tell if it works.

http://pymolwiki.org/index.php/Matrix_Copy

Troels Emtekær Linnet
Karl-Liebknecht-Straße 53, 2 RE
04107 Leipzig, Tyskland
Mobil:
+49 1577-8944752



2011/8/25 Bjoern-oliver Gohlke <bjoern-oliver.gohlke@student.uni-tuebingen.de>
The error I get is from the following command:
super 1A9U, mesh
 ExecutiveAlign: invalid selections for alignment.

I think that the problem is that I try to align the mesh points with an protein.
In my understanding, I need this one to run the get_object matrix command.
Or do I understand something in the wrong manner??


Zitat von Troels Emtekær Linnet <tlinnet@gmail.com>:


Can you provide the error message?



2011/8/25 Bjoern-oliver Gohlke <
bjoern-oliver.gohlke@student.uni-tuebingen.de>

Hi,

I actual try to get the coordinates of the mesh from a protein/selection.

At first I run the following command:
open("pymol.mesh","w").write( cmd.get_povray()[1] )

There I get points shifted by one axis or something like that.
Then somebody here from the mailinglist tells me that I have to use
cmd.get_object_matrix.
I read in the Wiki how to use this command.
(http://www.pymolwiki.org/index.php/Get_object_matrix)
But when I try to run the example with my points and the protein I
always get an error.
Can sombody help me, or tell me what I do wrong??

Thanks in advance,
Björn



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