Sorry for being rude, it was not meant in that way.

I was just puzzled by the fact, that you would be graded higher if you don't use the command line.
That is just weird.

Back to the question.
Suhaila, you should try to explore the "action button".

First get a protein, which is good to illustrate.
Go to the menu: "Plugin"->"PDB Loader Service". Enter: "1hpu"
(Or write in command: fetch 1hpu )  :-)

Then go to the "A" (Action) button in the right menu.
Press: preset -> ligand sites -> cartoon

Try some of the presets. They are very good!

If you want to find some polar contacts.
Select your residue by clicking it:
Action -> find -> polar contacts -> Then something from the menu

I hope that helps!

Best
Troels

2012/3/23 Suhaila Haji Mohd Hussin <bell_beauty12@hotmail.com>
OK. It does sound pretty weird prolly because the way I asked isn't precise.

We plot predicted contacts that can be viewed in various ways. So it'd be better to create a GUI select menu or something like that for user's ease of interacting with our project.

Suhaila.


From: tlinnet@gmail.com
Date: Thu, 22 Mar 2012 22:14:39 +0100
CC: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] GUI to improve interaction between user and PyMOL


That is seriously the strangest thing I ever heard about...

The GUI is for the small fast thing to do.
Why just don't press all button and see?
It can only take a little time.

Or google: pymol + "name of button"
That should give you an answer...

The command line is where the power is.
Use that.

/Troels



2012/3/22 Suhaila Haji Mohd Hussin <bell_beauty12@hotmail.com>
Hello everyone.
 
Is there any useful online reference that can be shared for me to learn how to add GUI executed by Python script?
 
I know PyMOL can visualize the protein just by typing in on PyMOL command but my supervisor will  grade my group project higher if we can make it more interactive where the user can just use a mouse to click button or something and less typing on command.
 
Best regards,
Suhaila

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