Have you tried this:

load run02-Protein-ANP-BA_ligands_omitmap.map.ccp4, fofc-map
isomesh +fofc_all, fofc-map, 3 , within_Ba , carve=1.5
isomesh -fofc_all, fofc-map, -3 , within_Ba , carve=1.5
color green, +fofc_all
color red, -fofc_all
set mesh_width=0.75, +fofc_all
set mesh_width=0.75, -fofc_all


2011/8/24 Jason Vertrees <jason.vertrees@schrodinger.com>
Hi Claudia,

We can't yet copy/extend maps. For the time being, you need to use
symmetry expansion on your molecule to get them into the density. See,

* -- http://www.pymolwiki.org/index.php/Symexp
* -- http://www.pymolwiki.org/index.php/Supercell

Cheers,

-- Jason

On Wed, Aug 24, 2011 at 3:57 PM, DelCampo, Claudia
<Claudia.DelCampo@umassmed.edu> wrote:
>
> Hello,
>
> I am trying to display a ccp4 map together with my protein model in Pymol. I followed the directions given in Pymol-wiki: "display ccp4 maps" and I get to see the map but it is not superimposed with the protein structure. How can i get the map to be positioned correctly?
>
> Thanks for your help!
>
> Post-doc
> Lambright Lab
> Program in Molecular Medicine
> Biotech Two - UMMS
> Phone:508-856-1087
>
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jason.Vertrees@schrodinger.com
(o) +1 (603) 374-7120

------------------------------------------------------------------------------
EMC VNX: the world's simplest storage, starting under $10K
The only unified storage solution that offers unified management
Up to 160% more powerful than alternatives and 25% more efficient.
Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev
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